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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57422295_57423869_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57422295 - 57423869
Intron Length:
1575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TGTTTTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
CCTAAATTAAAG
Flanking Amino Acid:
HASKPMYTPEPDICHELLGH
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
75.7
40.1
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
86.8
0.83
0.7
81.7
30.4
Minor 5ss
40.2
-1.1
2.8
57.6
39.6
Minor BPS
44.4
-0.5
1.9
47.71
44.7

Associated Gene:

Gene:
PAH
Ensembl Gene ID:
ENSAPLG00000011061
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011541
57397386 - 57432791
35406