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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57426798_57427831_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57426798 - 57427831
Intron Length:
1034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAATTTAA
5'SS Class:
major
3'SS Sequence:
AATTTCTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTCTCTCTAAAT
Flanking Amino Acid:
PDDFIEKLATVYWFTVEFGL
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.4
33.4
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
78.8
0.65
0.8
70.8
40.1
Minor 5ss
40.1
-1.1
2.8
50
46.3
Minor BPS
62.8
0.48
1.8
81.82
39.6

Associated Gene:

Gene:
PAH
Ensembl Gene ID:
ENSAPLG00000011061
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011541
57397386 - 57432791
35406