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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57428418_57431431_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57428418 - 57431431
Intron Length:
3014

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCCAG
5'SS Class:
major
3'SS Sequence:
TATTTTCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
GTTTTTGTATTT
Flanking Amino Acid:
ESFKDAKEKLRKFAQTIPRP
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
61.7
44.6
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
83.5
0.75
0.7
81.8
29.8
Minor 5ss
37.3
-1.4
3
47.3
48.1
Minor BPS
47.8
-0
2.2
71.36
40.7

Associated Gene:

Gene:
PAH
Ensembl Gene ID:
ENSAPLG00000011061
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011541
57397386 - 57432791
35406