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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57446254_57450340_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57446254 - 57450340
Intron Length:
4087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAC
U12 Branch Point Sequence:
TCATGCTATATG
Flanking Amino Acid:
IEYTAQETATWREVYRKLSS
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.6
34.9
Major BPS
65.2
0.38
1
57.3
39.1
Major PPT
87
0.83
0.7
84.4
30.5
Minor 5ss
38.5
-1.3
2.9
46.1
43.6
Minor BPS
41.9
-0.7
2.3
47.27
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010733
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011189
57438430 - 57468940
30511