Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57450487_57456366_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57450487 - 57456366

Intron Length:

5880

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCCAGTCAT

5'SS Class:

strong_major

3'SS Sequence:

TCCTTTTCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTAAA

U12 Branch Point Sequence:

AAGTCCTAAATT

Flanking Amino Acid:

QLQDVSGFLKERTGFQLRPV

Intron Amino Acid Position:

241

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.6

0.91

75.8

39.8

Major BPS

72.7

0.57

72.1

31.1

Major PPT

88.1

0.86

0.6

24.1

Minor 5ss

-3.3

3.5

32.3

42.2

Minor BPS

64.3

0.53

1.7

75.39

41.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010733

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011189

57438430 - 57468940

30511