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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57459019_57461514_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57459019 - 57461514
Intron Length:
2496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTCTTGTTATCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACAAATT
Flanking Amino Acid:
SETEIEKLATLYWFTVEFGL
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
81.4
0.71
0.9
81.3
35
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
51.7
0.13
2.2
81.93
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010733
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011189
57438430 - 57468940
30511