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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57461611_57467135_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57461611 - 57467135
Intron Length:
5525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTACAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTATTCTAACCT
Flanking Amino Acid:
GLLSSYGELMYALSNKPEYK
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
74.1
34.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
65.2
0.34
1.1
66.8
37.6
Minor 5ss
43.5
-0.7
3.1
57.4
41.8
Minor BPS
51.4
0.12
2
71.66
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010733
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011189
57438430 - 57468940
30511