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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57467270_57468780_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57467270 - 57468780
Intron Length:
1511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
CCTTCCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GGGTTCTGAACT
Flanking Amino Acid:
ESFEDAKAKLQNYSMKIKKP
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
75.5
34.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
75.2
0.57
0.7
68.6
25.2
Minor 5ss
38.2
-1.3
2.8
51.4
39.2
Minor BPS
63.9
0.51
1.5
74.33
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010733
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011189
57438430 - 57468940
30511