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Intron Name: Anas_platyrhynchos_platyrhynchos_1_5748265_5749278_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5748265 - 5749278

Intron Length:

1014

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAGGTTGT

5'SS Class:

major

3'SS Sequence:

TTTTTTCTTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACAAAA

U12 Branch Point Sequence:

TGTAACAAAAGT

Flanking Amino Acid:

RQQEEAAAQLKEKEEAHQLH

Intron Amino Acid Position:

128

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.4

0.62

72.5

39.9

Major BPS

51.5

0.04

0.9

57.3

24.9

Major PPT

92.2

0.95

0.5

89.3

19.6

Minor 5ss

42.2

-0.9

3.2

57.5

41.6

Minor BPS

41.7

-0.5

2.2

63.66

45.7

Associated Gene:

Gene:

UPF2

Ensembl Gene ID:

ENSAPLG00000010287

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039255

5694207 - 5750136

55930

ENSAPLT00000020497

5694207 - 5750136

55930

ENSAPLT00000019447

5694207 - 5754202

59996

ENSAPLT00000010758

5694207 - 5751719

57513