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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5749659_5754193_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5749659 - 5754193
Intron Length:
4535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTCAGTTTA
5'SS Class:
major
3'SS Sequence:
TTTGATTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTTCTTTGATT
Flanking Amino Acid:
MFVVCPVNTMPAE
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.3
76.8
34.8
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
83.3
0.75
0.8
77.6
36.5
Minor 5ss
39.3
-1.2
2.8
46.9
42.8
Minor BPS
83.7
1.14
0.9
94.68
25

Associated Gene:

Gene:
UPF2
Ensembl Gene ID:
ENSAPLG00000010287
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019447
5694207 - 5754202
59996