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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57522971_57523695_R

Intron Information:

Intron Rank:
134964
Intron Class:
major
Intron Phase:
Intron Coordinates:
57522971 - 57523695
Intron Length:
725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TAAAATTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TGTCTCTTGATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
72.4
0.5
1
62.3
47.6
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
66.4
0.5
1.2
71.45
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019963
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019452
57522706 - 57524168
1463