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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57539734_57548640_F

Intron Information:

Intron Rank:
124442
Intron Class:
major
Intron Phase:
Intron Coordinates:
57539734 - 57548640
Intron Length:
8907

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTAATCTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
79.5
0.66
0.9
73.5
41.9
Minor 5ss
44.9
-0.6
2.8
61.5
43.4
Minor BPS
50.8
0
1.9
67.61
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017087
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033143
57539473 - 57549535
10063