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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57711034_57714707_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57711034 - 57714707
Intron Length:
3674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTAATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTCTTTTTAATA
Flanking Amino Acid:
FGIISVLTLFRSPAQSDGSS
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.8
1.03
0.7
89.6
22.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.1
0.63
0.9
74.1
34.4
Minor 5ss
32.9
-1.9
2.7
43.2
43.8
Minor BPS
68.4
0.57
1.2
69.67
37.9

Associated Gene:

Gene:
PARPBP
Ensembl Gene ID:
ENSAPLG00000010548
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010998
57699320 - 57749390
50071