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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57739737_57741744_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57739737 - 57741744
Intron Length:
2008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTTCTTATACA
Flanking Amino Acid:
VNRQDQSNAKVMFLAKKCVY
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
82.6
29.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.8
0.78
0.8
80.2
30.8
Minor 5ss
35.2
-1.7
3
49.1
46.7
Minor BPS
54.9
0.15
2
70.62
41.9

Associated Gene:

Gene:
PARPBP
Ensembl Gene ID:
ENSAPLG00000010548
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010998
57699320 - 57749390
50071