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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57741853_57743658_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57741853 - 57743658
Intron Length:
1806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
ATTCTTATTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTGTATTTAAAT
Flanking Amino Acid:
LVSEEESIAPVQLLEFISGI
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
72
0.5
1.1
72.1
36.4
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
66.6
0.6
1.6
82.17
39

Associated Gene:

Gene:
PARPBP
Ensembl Gene ID:
ENSAPLG00000010548
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010998
57699320 - 57749390
50071