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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57775745_57778032_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57775745 - 57778032
Intron Length:
2288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTTTTCACATCC
Flanking Amino Acid:
LNRFSTVCEEKLSALSLRIQ
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
35
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.5
0.66
0.8
73.3
37.1
Minor 5ss
49.9
-0
2.4
66.4
45.1
Minor BPS
46.9
-0.2
2
64.26
41

Associated Gene:

Gene:
WASHC3
Ensembl Gene ID:
ENSAPLG00000018769
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019686
57774975 - 57789487
14513