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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57778099_57779498_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57778099 - 57779498
Intron Length:
1400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTATG
5'SS Class:
major
3'SS Sequence:
TTTGTATGCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
CGTTGCTTATTT
Flanking Amino Acid:
ETTLNILDAKLSSIPGLEDV
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
75.6
40
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
75.2
0.57
1
73.7
40.8
Minor 5ss
41.8
-0.9
2.5
51.4
45.2
Minor BPS
52.9
0.17
2.1
72.14
45.2

Associated Gene:

Gene:
WASHC3
Ensembl Gene ID:
ENSAPLG00000018769
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019686
57774975 - 57789487
14513