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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57779625_57781254_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57779625 - 57781254
Intron Length:
1630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
TCTTTGTATACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GCATACCTAACC
Flanking Amino Acid:
QQAAVSPQCGQNNVHEESLQ
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
74.7
41.5
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
81.5
0.71
0.9
76.3
36.9
Minor 5ss
39.4
-1.2
2.9
52.3
44.3
Minor BPS
51.3
0.02
1.9
62.22
42.3

Associated Gene:

Gene:
WASHC3
Ensembl Gene ID:
ENSAPLG00000018769
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019686
57774975 - 57789487
14513