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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57781366_57785787_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57781366 - 57785787
Intron Length:
4422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TCTTCCTACACA
Flanking Amino Acid:
YARYLKMVQVGVPVMAIRNK
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
82
26.1
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
77.4
0.62
0.8
72.6
31.1
Minor 5ss
39.7
-1.2
2.8
45.9
43.7
Minor BPS
59.7
0.3
2.1
74.7
43.3

Associated Gene:

Gene:
WASHC3
Ensembl Gene ID:
ENSAPLG00000018769
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019686
57774975 - 57789487
14513