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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57821662_57823839_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57821662 - 57823839
Intron Length:
2178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTATC
5'SS Class:
major
3'SS Sequence:
ATTTTTGTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTATCTTAAGC
Flanking Amino Acid:
FFLTFIRDFQRVSLRISTEI
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.2
77.3
37.8
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
81.1
0.7
0.9
74
41
Minor 5ss
35.3
-1.7
2.9
45.6
42.6
Minor BPS
69
0.58
1.6
78.58
37

Associated Gene:

Gene:
DRAM1
Ensembl Gene ID:
ENSAPLG00000016221
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016924
57820734 - 57840908
20175