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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57830598_57831824_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57830598 - 57831824
Intron Length:
1227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
GATATGTGAACG
Flanking Amino Acid:
GFMINISALLGAITMYIRYL
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
87.1
30
Major BPS
54
0.1
1
59.7
32.6
Major PPT
100
1.12
0.4
100
0
Minor 5ss
37.9
-1.4
3.1
50.4
46.1
Minor BPS
44.5
-0.5
2.2
50.9
42.7

Associated Gene:

Gene:
DRAM1
Ensembl Gene ID:
ENSAPLG00000016221
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016924
57820734 - 57840908
20175