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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5783551_5784617_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5783551 - 5784617
Intron Length:
1067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTTCTGTACCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTGTACCA
Flanking Amino Acid:
MGIKFLEVIKPF
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
66.3
39.5
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
80
0.68
0.9
74.2
40.2
Minor 5ss
32.8
-2
2.7
42.4
38.3
Minor BPS
57.5
0.23
2.2
78.6
38.6

Associated Gene:

Gene:
SEC61A2
Ensembl Gene ID:
ENSAPLG00000005921
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006192
5783106 - 5797927
14822