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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5784686_5788539_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5784686 - 5788539
Intron Length:
3854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CTGTCCCCAATC
Flanking Amino Acid:
LPEIQKPERKIQFREKVLWT
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
80
0.75
1
78.6
31
Major PPT
79.5
0.66
0.9
73.4
36.5
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
50
-0
1.9
63.16
42.7

Associated Gene:

Gene:
SEC61A2
Ensembl Gene ID:
ENSAPLG00000005921
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006192
5783106 - 5797927
14822