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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57849553_57858735_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57849553 - 57858735
Intron Length:
9183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
AATTTTAGAAGA
Flanking Amino Acid:
MVVLEWSRDQY
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
75.9
35.2
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
93.5
0.98
0.6
92.1
18.4
Minor 5ss
33.7
-1.9
2.9
38
41
Minor BPS
44.6
-0.4
1.9
56.3
36.4

Associated Gene:

Gene:
GNPTAB
Ensembl Gene ID:
ENSAPLG00000016228
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016947
57849502 - 57896394
46893