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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57854290_57858735_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57854290 - 57858735
Intron Length:
4446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTACG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
AATTTTAGAAGA
Flanking Amino Acid:
MIVSALQFGEVVLEWSRDQY
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1.2
75.3
40.8
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
93.5
0.98
0.6
92.1
18.4
Minor 5ss
31.5
-2.1
2.4
35.1
40.7
Minor BPS
44.6
-0.4
1.9
56.3
36.4

Associated Gene:

Gene:
GNPTAB
Ensembl Gene ID:
ENSAPLG00000016228
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023732
57854173 - 57896394
42222
ENSAPLT00000043829
57854173 - 57896394
42222
ENSAPLT00000035536
57854173 - 57892194
38022
ENSAPLT00000033453
57854173 - 57896394
42222
ENSAPLT00000029165
57854173 - 57895808
41636