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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57858822_57862567_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57858822 - 57862567
Intron Length:
3746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCTAT
5'SS Class:
major
3'SS Sequence:
TTGAATTATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTCATTTGAATT
Flanking Amino Acid:
DNVAGKSFQNRLCLPMPIDV
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
71.4
36.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
68
0.41
1
63
42.9
Minor 5ss
40.6
-1.1
3.1
56.2
48
Minor BPS
57.5
0.31
1.4
72.61
39

Associated Gene:

Gene:
GNPTAB
Ensembl Gene ID:
ENSAPLG00000016228
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016947
57849502 - 57896394
46893
ENSAPLT00000035536
57854173 - 57892194
38022
ENSAPLT00000033453
57854173 - 57896394
42222
ENSAPLT00000029165
57854173 - 57895808
41636
ENSAPLT00000023732
57854173 - 57896394
42222
ENSAPLT00000037752
57856495 - 57896394
39900