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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57858822_57864682_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57858822 - 57864682
Intron Length:
5861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCTAT
5'SS Class:
major
3'SS Sequence:
CATTTTGTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AGTTACTTAATG
Flanking Amino Acid:
DNVAGKSFQNREILGKNATE
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
71.4
36.8
Major BPS
100
1.24
0.5
100
0
Major PPT
69.7
0.44
1
65.9
39.5
Minor 5ss
40.6
-1.1
3.1
56.2
48
Minor BPS
66.8
0.39
1.6
67.92
39.5

Associated Gene:

Gene:
GNPTAB
Ensembl Gene ID:
ENSAPLG00000016228
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043829
57854173 - 57896394
42222