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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57861051_57862567_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57861051 - 57862567
Intron Length:
1517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
TTGAATTATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTCATTTGAATT
Flanking Amino Acid:
SQRLLCLLTKRLCLPMPIDV
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
68
0.41
1
63
42.9
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
57.5
0.31
1.4
72.61
39

Associated Gene:

Gene:
GNPTAB
Ensembl Gene ID:
ENSAPLG00000016228
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018535
57860717 - 57896394
35678