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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57862688_57865571_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57862688 - 57865571
Intron Length:
2884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATAATC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTGCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TTAAATATACCT
Flanking Amino Acid:
EQMEEEQKIMSEKQLECLLT
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
80.9
31.3
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
82.6
0.73
0.9
76.8
37.1
Minor 5ss
38.1
-1.3
3
52.4
44.3
Minor BPS
45.3
-0.2
2
67.66
42.6

Associated Gene:

Gene:
GNPTAB
Ensembl Gene ID:
ENSAPLG00000016228
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023732
57854173 - 57896394
42222