Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57866950_57874973_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57866950 - 57874973

Intron Length:

8024

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGGACG

5'SS Class:

strong_major

3'SS Sequence:

TTTGCTTTTGTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATTAT

U12 Branch Point Sequence:

CATGCTGGAAAT

Flanking Amino Acid:

PESLASKVKLLQLYSEASVA

Intron Amino Acid Position:

220

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

68.8

41.8

Major BPS

68.1

0.45

58.1

38.5

Major PPT

85.1

0.79

0.7

81.1

30.9

Minor 5ss

32.7

-2

3.1

40.8

Minor BPS

42.2

-0.5

2.2

58.75

44.4

Associated Gene:

Gene:

GNPTAB

Ensembl Gene ID:

ENSAPLG00000016228

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016947

57849502 - 57896394

46893

ENSAPLT00000029165

57854173 - 57895808

41636

ENSAPLT00000043829

57854173 - 57896394

42222

ENSAPLT00000023732

57854173 - 57896394

42222

ENSAPLT00000037752

57856495 - 57896394

39900

ENSAPLT00000018690

57863707 - 57896394

32688

ENSAPLT00000035536

57854173 - 57892194

38022

ENSAPLT00000018535

57860717 - 57896394

35678

ENSAPLT00000033453

57854173 - 57896394

42222