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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57878253_57879903_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57878253 - 57879903
Intron Length:
1651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
AATGTTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
CAGTCCTTGACT
Flanking Amino Acid:
DFYSHSKGQKVYLTWPVPNC
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
33.4
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
72.4
0.5
1
62.3
47.6
Minor 5ss
46.5
-0.4
2.8
65.7
45.4
Minor BPS
75.3
0.88
1.2
79.95
42.3

Associated Gene:

Gene:
GNPTAB
Ensembl Gene ID:
ENSAPLG00000016228
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016947
57849502 - 57896394
46893
ENSAPLT00000029165
57854173 - 57895808
41636
ENSAPLT00000043829
57854173 - 57896394
42222
ENSAPLT00000023732
57854173 - 57896394
42222
ENSAPLT00000037752
57856495 - 57896394
39900
ENSAPLT00000018690
57863707 - 57896394
32688
ENSAPLT00000035536
57854173 - 57892194
38022
ENSAPLT00000018535
57860717 - 57896394
35678
ENSAPLT00000033453
57854173 - 57896394
42222