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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57880028_57882336_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57880028 - 57882336
Intron Length:
2309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TGACTGGTCACT
Flanking Amino Acid:
ACDWDGGDCIGNSGGSRYVA
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
69.6
36.5
Major BPS
77.3
0.68
1
81.5
27
Major PPT
80
0.67
0.7
78
23.9
Minor 5ss
31.4
-2.1
3.1
36.2
41.7
Minor BPS
37.3
-0.9
2.7
58.23
44.6

Associated Gene:

Gene:
GNPTAB
Ensembl Gene ID:
ENSAPLG00000016228
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018690
57863707 - 57896394
32688
ENSAPLT00000035536
57854173 - 57892194
38022
ENSAPLT00000018535
57860717 - 57896394
35678
ENSAPLT00000033453
57854173 - 57896394
42222
ENSAPLT00000043829
57854173 - 57896394
42222
ENSAPLT00000016947
57849502 - 57896394
46893
ENSAPLT00000029165
57854173 - 57895808
41636
ENSAPLT00000023732
57854173 - 57896394
42222
ENSAPLT00000037752
57856495 - 57896394
39900