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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57882541_57883930_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57882541 - 57883930
Intron Length:
1390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TCACACTGAAAA
Flanking Amino Acid:
CGFDAGDCGQDHFEEMYKVT
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
88.7
25.1
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
93.7
0.98
0.6
88.2
29.1
Minor 5ss
43.5
-0.7
2.6
59.2
45.4
Minor BPS
47.8
-0.1
1.7
57.61
40.7

Associated Gene:

Gene:
GNPTAB
Ensembl Gene ID:
ENSAPLG00000016228
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018690
57863707 - 57896394
32688
ENSAPLT00000035536
57854173 - 57892194
38022
ENSAPLT00000018535
57860717 - 57896394
35678
ENSAPLT00000033453
57854173 - 57896394
42222
ENSAPLT00000016947
57849502 - 57896394
46893
ENSAPLT00000029165
57854173 - 57895808
41636
ENSAPLT00000043829
57854173 - 57896394
42222
ENSAPLT00000023732
57854173 - 57896394
42222
ENSAPLT00000037752
57856495 - 57896394
39900