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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57886231_57886491_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57886231 - 57886491
Intron Length:
261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ACTAATTTAATG
Flanking Amino Acid:
DRTVMQELQDMFPEEFDKTS
Intron Amino Acid Position:
942

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
79.9
34.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77
0.61
0.9
73.6
36
Minor 5ss
36.3
-1.5
2.9
47
41.7
Minor BPS
52.4
-0
1.6
55.14
40.5

Associated Gene:

Gene:
GNPTAB
Ensembl Gene ID:
ENSAPLG00000016228
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018690
57863707 - 57896394
32688
ENSAPLT00000035536
57854173 - 57892194
38022
ENSAPLT00000018535
57860717 - 57896394
35678
ENSAPLT00000033453
57854173 - 57896394
42222
ENSAPLT00000043829
57854173 - 57896394
42222
ENSAPLT00000016947
57849502 - 57896394
46893
ENSAPLT00000029165
57854173 - 57895808
41636
ENSAPLT00000023732
57854173 - 57896394
42222
ENSAPLT00000037752
57856495 - 57896394
39900