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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57891119_57892101_F

Intron Information:

Intron Rank:
18
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
57891119 - 57892101
Intron Length:
983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCCTGT
5'SS Class:
weak_minor
3'SS Sequence:
TACTTATTTCCAG|T
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTCTACTTATTT
Flanking Amino Acid:
GQLDDIRKNPSFMDEA*
Intron Amino Acid Position:
1153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.43
1.2
62.3
44.7
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
82.1
0.72
0.9
73.6
40.5
Minor 5ss
75.2
0.85
1.8
82.7
36.6
Minor BPS
62.8
0.48
1.8
80.67
41.5

Associated Gene:

Gene:
GNPTAB
Ensembl Gene ID:
ENSAPLG00000016228
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035536
57854173 - 57892194
38022