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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57891119_57893112_F

Intron Information:

Intron Rank:
18
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
57891119 - 57893112
Intron Length:
1994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCCTGT
5'SS Class:
weak_minor
3'SS Sequence:
TTTTCTTTTCTAG|A
3'SS Class:
minor_hybrid
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AATATGCTAACA
Flanking Amino Acid:
GQLDDIRKNPRKFVCLNDNI
Intron Amino Acid Position:
1115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.43
1.2
62.3
44.7
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
90.8
0.92
0.6
85.1
29.7
Minor 5ss
75.2
0.85
1.8
82.7
36.6
Minor BPS
45.2
-0.3
2.3
60.3
39.1

Associated Gene:

Gene:
GNPTAB
Ensembl Gene ID:
ENSAPLG00000016228
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018690
57863707 - 57896394
32688
ENSAPLT00000037752
57856495 - 57896394
39900
ENSAPLT00000018535
57860717 - 57896394
35678
ENSAPLT00000033453
57854173 - 57896394
42222
ENSAPLT00000016947
57849502 - 57896394
46893
ENSAPLT00000029165
57854173 - 57895808
41636
ENSAPLT00000023732
57854173 - 57896394
42222
ENSAPLT00000043829
57854173 - 57896394
42222