About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57900697_57902026_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
57900697 - 57902026
Intron Length:
1330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCTTACA
5'SS Class:
major
3'SS Sequence:
AATTCACATTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTTTGTTAATC
Flanking Amino Acid:
LSGSEEDIREGETPVMEKHG
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69.7
36.1
Major BPS
84.4
0.85
1
84
34.5
Major PPT
57.4
0.17
1.1
59.1
40.6
Minor 5ss
29.6
-2.3
2.7
35
40.7
Minor BPS
67.8
0.54
2
81.43
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001471
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001551
57899366 - 57909674
10309