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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57902103_57902485_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57902103 - 57902485
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
AACTATTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AGTTTTTAAACT
Flanking Amino Acid:
VTTHVVPDDVGGEVQNMLER
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
76.9
38.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.2
0.52
0.9
70.2
40.1
Minor 5ss
34.7
-1.7
3.8
47.1
48.3
Minor BPS
63.3
0.49
1.6
78.3
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001471
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001551
57899366 - 57909674
10309