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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57902521_57904096_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57902521 - 57904096
Intron Length:
1576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCATTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GTATGCTTAATT
Flanking Amino Acid:
EVQNMLERFGADINKALLAK
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.8
22.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
81.7
0.71
0.8
74.5
35
Minor 5ss
36
-1.6
2.6
43.5
43.6
Minor BPS
68.4
0.66
1.8
81.66
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001471
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001551
57899366 - 57909674
10309