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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57906259_57907335_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57906259 - 57907335
Intron Length:
1077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
TCCTTAACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTATCCTTAACT
Flanking Amino Acid:
IKQLYEQFLKSMEELEKTNE
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.4
36.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
76.8
0.6
0.9
70.6
33.7
Minor 5ss
34.3
-1.8
3.5
46.3
49
Minor BPS
94.1
1.46
0.7
101.3
24.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001471
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001551
57899366 - 57909674
10309