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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57917125_57920663_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57917125 - 57920663
Intron Length:
3539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTAACTAAATT
Flanking Amino Acid:
TYVSGTLRFGKVDVTEVQIA
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.5
40.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
83.1
0.74
0.7
77
31.7
Minor 5ss
36.8
-1.5
2.7
42.8
38.2
Minor BPS
60
0.39
1.9
81.74
39.8

Associated Gene:

Gene:
CHPT1
Ensembl Gene ID:
ENSAPLG00000001976
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021309
57916319 - 57929939
13621
ENSAPLT00000002087
57916989 - 57930745
13757