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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57935163_57943769_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57935163 - 57943769
Intron Length:
8607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTATTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TGTCCCTTATTT
Flanking Amino Acid:
AEVDCKLEVKGGLSFFRLLM
Intron Amino Acid Position:
1140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
77.6
0.62
0.8
72.8
30.8
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
68.1
0.65
1.6
82.47
38.8

Associated Gene:

Gene:
MYBPC1
Ensembl Gene ID:
ENSAPLG00000007103
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046080
57935062 - 58016222
81161