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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57937516_57943769_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57937516 - 57943769
Intron Length:
6254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
AAATTGTTACTT
Flanking Amino Acid:
AEVDCKLEVKVTQ*
Intron Amino Acid Position:
1165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
74.7
0.56
0.7
73.4
24.9
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
46.2
-0.2
2.2
63.61
41.1

Associated Gene:

Gene:
MYBPC1
Ensembl Gene ID:
ENSAPLG00000007103
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040800
57937476 - 58016222
78747
ENSAPLT00000033973
57937476 - 58016222
78747
ENSAPLT00000031822
57937476 - 58016222
78747