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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57939023_57943769_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57939023 - 57943769
Intron Length:
4747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTAATTCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
AATATTCTAATT
Flanking Amino Acid:
AEVDCKLEVKVIYQGVINAG
Intron Amino Acid Position:
1163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
79.6
0.67
0.9
73.3
36.7
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
51
0.11
1.6
68.58
36.2

Associated Gene:

Gene:
MYBPC1
Ensembl Gene ID:
ENSAPLG00000007103
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044144
57937476 - 58016222
78747
ENSAPLT00000031287
57937476 - 58016222
78747
ENSAPLT00000007443
57937476 - 58016222
78747