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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5794067_5794992_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5794067 - 5794992
Intron Length:
926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGGTG
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
CAGTTCAAAACT
Flanking Amino Acid:
FSPTTINTGRGTEFEGAVIA
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
69.5
41.1
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
84.3
0.77
0.7
80.8
31.2
Minor 5ss
38.9
-1.2
3.6
54.5
49.7
Minor BPS
48
-0
2
65.23
45.2

Associated Gene:

Gene:
SEC61A2
Ensembl Gene ID:
ENSAPLG00000005921
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006192
5783106 - 5797927
14822