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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57944908_57946428_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57944908 - 57946428
Intron Length:
1521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTTAGCTAA
5'SS Class:
major
3'SS Sequence:
TTTCATTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTTATAAATA
Flanking Amino Acid:
TKESALIAKDGKVYKYPVYD
Intron Amino Acid Position:
1055

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.2
65
37.2
Major BPS
100
1.24
0.5
100
0
Major PPT
80.5
0.69
0.8
76.3
32
Minor 5ss
39.7
-1.2
2.8
45.2
44
Minor BPS
52.7
0.08
1.9
67.42
39.7

Associated Gene:

Gene:
MYBPC1
Ensembl Gene ID:
ENSAPLG00000007103
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031822
57937476 - 58016222
78747
ENSAPLT00000046080
57935062 - 58016222
81161
ENSAPLT00000031287
57937476 - 58016222
78747
ENSAPLT00000044144
57937476 - 58016222
78747
ENSAPLT00000007443
57937476 - 58016222
78747
ENSAPLT00000040800
57937476 - 58016222
78747
ENSAPLT00000033973
57937476 - 58016222
78747