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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57946589_57948288_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57946589 - 57948288
Intron Length:
1700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTTAG
U12 Branch Point Sequence:
GGAAGCTTAGCC
Flanking Amino Acid:
TIQKADKKSMEWFTVIEHYH
Intron Amino Acid Position:
1002

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
47.4
-0.1
1.5
43.1
41.5
Major PPT
82.7
0.74
0.9
80.2
37.3
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
46.1
-0.3
2
54.07
43

Associated Gene:

Gene:
MYBPC1
Ensembl Gene ID:
ENSAPLG00000007103
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031822
57937476 - 58016222
78747
ENSAPLT00000046080
57935062 - 58016222
81161
ENSAPLT00000031287
57937476 - 58016222
78747
ENSAPLT00000044144
57937476 - 58016222
78747
ENSAPLT00000007443
57937476 - 58016222
78747
ENSAPLT00000040800
57937476 - 58016222
78747
ENSAPLT00000033973
57937476 - 58016222
78747