About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57951382_57956017_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57951382 - 57956017
Intron Length:
4636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTAAACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTTCAT
U12 Branch Point Sequence:
TTTCCCTAAACT
Flanking Amino Acid:
GYVVEYCFEGTDEWIVANPE
Intron Amino Acid Position:
781

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
67
0.42
1.4
71.4
45.1
Major PPT
62.2
0.27
1
56.6
37.7
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
77.1
0.93
1.6
93.68
34.1

Associated Gene:

Gene:
MYBPC1
Ensembl Gene ID:
ENSAPLG00000007103
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046080
57935062 - 58016222
81161