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Intron Name: Anas_platyrhynchos_platyrhynchos_1_5795154_5796206_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5795154 - 5796206

Intron Length:

1053

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAATGA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAA

U12 Branch Point Sequence:

TAGAAATAAACT

Flanking Amino Acid:

FVFAVVIYFQGFRVDLPIKS

Intron Amino Acid Position:

260

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.73

71.1

35.5

Major BPS

0.3

62.3

30.4

Major PPT

92.2

0.95

0.5

89.3

19.6

Minor 5ss

36.7

-1.5

3.1

47.8

47.6

Minor BPS

45.4

-0.2

2.1

64.46

Associated Gene:

Gene:

SEC61A2

Ensembl Gene ID:

ENSAPLG00000005921

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006192

5783106 - 5797927

14822