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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57957594_57958198_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57957594 - 57958198
Intron Length:
605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACATACT
5'SS Class:
major
3'SS Sequence:
GTTTGGTCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
GCCTCTGTAATA
Flanking Amino Acid:
PANDGGSPILGYFIERKKKQ
Intron Amino Acid Position:
673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
77.9
36.5
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
64.4
0.32
1
58.9
41.9
Minor 5ss
36.7
-1.5
3.1
52.4
44.2
Minor BPS
49.6
-0
2
58.91
41.9

Associated Gene:

Gene:
MYBPC1
Ensembl Gene ID:
ENSAPLG00000007103
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031822
57937476 - 58016222
78747
ENSAPLT00000046080
57935062 - 58016222
81161
ENSAPLT00000031287
57937476 - 58016222
78747
ENSAPLT00000044144
57937476 - 58016222
78747
ENSAPLT00000007443
57937476 - 58016222
78747
ENSAPLT00000040800
57937476 - 58016222
78747
ENSAPLT00000033973
57937476 - 58016222
78747